• otter

    Oncological TranscripTomE Recognition. A a RNA-Seq gene expression-based CNN classifier for the identification of childhood cancer types.

  • raccoon


    Resolution-Adaptive Coarse-to-fine Clusters OptimizatiON in Python. This library allows to build a hierarchy of optimal clusters, update it with unseen data, or assign new samples post-training with a k-NN classifier. A GPU implamentation is available with RAPIDS.

  • tapir


    Transcriptome analysis in Python. This library provides functions for the analysis and plotting of gene expression data. It imports differential expression functionalities from EdgeR to Python.

  • miniW2V

    Minimal word2vec skip-gram implementation in PyTorch with negative sampling. It includes a web scraper for scientific abstracts from PubMed, Google Scholar and bioRxiv.

  • SimpSOM


    A simple and easy to learn library for Kohonen Self-organizing maps.